The Fight to Save Our Ash Trees

We have 157,000 hectares of ash woodland in the UK, together with approximately 12 million ash trees outside the woodlands in gardens, parklands and along roadsides. These ash trees are associated with and support 1,000 different species, including 12 species of bird, 55 species of mammals and 239 species of invertebrates. But ash trees are now under attack from a deadly enemy - a fungus called Hymenoscyphus fraxineus (previously Chalara fraxinea). This fungal pathogen kills the leaves, then the branches and trunk and eventually the whole tree dies. Ash dieback, as this deadly disease is known, originated in Asia but is spreading across Europe. Ash dieback was first seen in Eastern Europe in 1992 and it now affects more than 2 million square kilometres from Scandinavia to Italy. The disease was first found in the UK in 2012 and has since spread from Norfolk and Suffolk to South Wales. Recent evidence suggests that ash dieback could wipe out all ash trees across Europe unless action...
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Kakapo 125: Sequencing the genomes of an entire species

New Zealand has been separate from other land masses for approximately 80 million years. This geographic isolation has allowed for millions of years of natural selection, largely in the absence of predatory mammals. The result has been the evolution of some of the worlds most unique and unusual species. The Kakapo is one of these unique and unusual species and it is currently critically endangered with only 125 known living Kakapo left. The Kakapo, also known as the owl parrot, is the world’s largest parrot. It is flightless, nocturnal and ground-dwelling. Due to Polynesian and European colonisation and the introduction of predatory mammals such as rats, cats, ferrets and stoats, the flightless Kakapo was hunted and predated to near extinction. Once widespread across New Zealand, it is now confined to three predator-free islands, Whenua Hou, Anchor and Hautura-o-Toi. Since the start of the Kakapo Recovery plan in the 1980s, Kakapo numbers have increased from a low of only 51 individuals. Scientists in...
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The Cheetah: One of Nature’s Great Survivors

The Cheetah: One of Nature’s Great Survivors

The African cheetah (Acinonyx jubatus) is the world’s fastest land mammal. It has numerous physiological adaptations that allow it to reach speeds over 100 km/hr including elongated legs, slim aerodynamic skull, enlarged adrenal glands, liver and heart, and semi-retractable claws that grip the earth. Modern cheetahs range across eastern and southern Africa, with a small population in Iran. But their numbers are declining and there are now less than 10,000 in the wild. This is a drop of 90 percent in the past 100 years. This decline in numbers is mostly due to loss of habitat, illegal trade by hunters, conflict with farmers and road accidents. They are considered highly endangered by wildlife authorities and governments. An international team of researchers led by Stephen O’Brien, of the Theodosius Dobzhansky Centre for Genome Bioinformatics at St.Petersburg State University, and including members of the Beijing Genomics Institute and the Cheetah Conservation Fund (CCF) have recently sequenced the genome from a male Namibian cheetah and...
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Six New African Frog Species Discovered

Six New African Frog Species Discovered

Zoologist Ben Evans, of McMaster University in Hamilton, and a team of researchers have discovered six new species of African clawed frog (Xenopus).  All six new species are relatively small (approximately 5 cm) and were found in West and sub-Saharan Africa. African clawed frogs are highly aquatic, living in slow moving or stagnant water. Characteristically they have streamlined and flattened bodies, a vocal organ specialised for underwater sound production, lateral line organs, claws on the first three toes (inner) and fully webbed toes. African clawed frogs are widely used as a model organism for biological research including developmental biology, cell biology, toxicology, neuroscience and for modelling human disease and birth defects. They also provide a unique system for analyses of genome evolution and whole genome duplication in vertebrates, as most clawed frog species are polyploid ie they have multiple sets of DNA due to genome duplication. The discovery of these six new species, increases the number of known clawed frog species to...
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Decoding the Sea Otter Genome

Decoding the Sea Otter Genome

Large sea otter populations once ranged from Northern Japan all the way around the Northern Pacific Rim to Baja California. However, in 1741 when the fur trade began, their numbers started to rapidly decline. The pelts of sea otters were so in demand that sea otter populations were driven to near extinction by the end of the 19thcentury. In 1911 sea otters were protected by the International Fur Seal Treaty but for some populations this was already too late. In the Kuril Islands, Kamchatka Peninsula, Aleutian Islands, South-Central Alaska and California the small remaining populations began to grow. Some populations have returned to their historical population sizes but others, such as the population in California, have grown more slowly. Annabel Beichman, a PhD student at UCLA, together with Monterey Bay Aquarium are leading the effort to aid the recovery of the sea otters. They plan the first ever sequencing of the sea otter genome. The extreme decline, to a very small size,...
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DNA analysis joins the fight against seafood fraud

Fraud is one of the biggest issues in seafood industry. It is thought that up to one quarter of the seafood on the market is not labeled with the correct species ID and behind this also lies the depletion of marine populations, threats to food security and up to $23 billion in economic losses globally each year. DNA and genomics have great potential to improve seafood traceability and therefore protect consumers. Currently, DNA barcoding, the term given to species identification by use of DNA technology is carried out by sequencing a section of the mitochondrial DNA to identify the species and in many cases these data can be used to trace the sample back to the population of origin. Mislabeling usually involves substitution of a cheaper fish with a more expensive one (e.g. pollack for cod, pollack for langoustines in “scampi” or rainbow trout for sea trout). One final possibility that genetic analysis offers the chance to identify traces of DNA from illegally...
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